@Article{alok17,
  author       = {Anas Al-Okaily and Badar Almarri and Sultan Al Yami and Chun-Hsi Huang},
  date         = {2017-04-01},
  journaltitle = {Journal of Computational Biology},
  title        = {Toward a Better Compression for {DNA} Sequences Using Huffman Encoding},
  doi          = {10.1089/cmb.2016.0151},
  number       = {4},
  pages        = {280--288},
  volume       = {24},
  publisher    = {Mary Ann Liebert Inc},
}

@Online{bam,
  author  = {The SAM/BAM Format Specification Working Group},
  date    = {2022-08-22},
  title   = {Sequence Alignment/Map Format Specification},
  url     = {https://github.com/samtools/hts-specs},
  urldate = {2022-09-12},
  version = {44b4167},
}

@Article{Cock_2009,
  author       = {Peter J. A. Cock and Christopher J. Fields and Naohisa Goto and Michael L. Heuer and Peter M. Rice},
  date         = {2009-12},
  journaltitle = {Nucleic Acids Research},
  title        = {The Sanger {FASTQ} file format for sequences with quality scores, and the Solexa/Illumina {FASTQ} variants},
  doi          = {10.1093/nar/gkp1137},
  number       = {6},
  pages        = {1767--1771},
  volume       = {38},
  publisher    = {Oxford University Press ({OUP})},
}

@Article{cells,
  author       = {Eva Bianconi and Allison Piovesan and Federica Facchin and Alina Beraudi and Raffaella Casadei and Flavia Frabetti and Lorenza Vitale and Maria Chiara Pelleri and Simone Tassani and Francesco Piva and Soledad Perez-Amodio and Pierluigi Strippoli and Silvia Canaider},
  date         = {2013-07},
  journaltitle = {Annals of Human Biology},
  title        = {An estimation of the number of cells in the human body},
  doi          = {10.3109/03014460.2013.807878},
  number       = {6},
  pages        = {463--471},
  volume       = {40},
  publisher    = {Informa {UK} Limited},
}

@Article{dna_structure,
  author       = {J. D. WATSON and F. H. C. CRICK},
  date         = {1953-04},
  journaltitle = {Nature},
  title        = {Molecular Structure of Nucleic Acids: A Structure for Deoxyribose Nucleic Acid},
  doi          = {10.1038/171737a0},
  number       = {4356},
  pages        = {737--738},
  volume       = {171},
  publisher    = {Springer Science and Business Media {LLC}},
}

@Article{iupac,
  author       = {Andrew D. Johnson},
  date         = {2010-03},
  journaltitle = {Bioinformatics},
  title        = {An extended {IUPAC} nomenclature code for polymorphic nucleic acids},
  doi          = {10.1093/bioinformatics/btq098},
  number       = {10},
  pages        = {1386--1389},
  volume       = {26},
  publisher    = {Oxford University Press ({OUP})},
}

@TechReport{defalte,
  author    = {L Peter Deutsch},
  date      = {1996-05},
  title     = {{DEFLATE} Compressed Data Format Specification version 1.3},
  doi       = {10.17487/rfc1951},
  url       = {https://www.rfc-editor.org/rfc/rfc1951},
  publisher = {{RFC} Editor},
}

@Article{Shannon_1948,
  author       = {C. E. Shannon},
  date         = {1948-07},
  journaltitle = {Bell System Technical Journal},
  title        = {A Mathematical Theory of Communication},
  doi          = {10.1002/j.1538-7305.1948.tb01338.x},
  number       = {3},
  pages        = {379--423},
  volume       = {27},
  publisher    = {Institute of Electrical and Electronics Engineers ({IEEE})},
}

@Online{ucsc,
  author  = {UCSC - University of California, Santa Cruz},
  date    = {2022-10-28},
  title   = {UCSC Genome Browser},
  url     = {https://genome.ucsc.edu/},
  urldate = {2022-10-28},
}

@Online{ensembl,
  author = {Paul Flicek},
  date   = {2022-10-24},
  title  = {ENSEMBL Project},
  url    = {http://www.ensembl.org/},
}

@Online{ga4gh,
  date  = {2022-10-10},
  title = {Global Alliance for Genomics and Health},
  url   = {https://github.com/samtools/hts-specs.},
}

@Online{bed,
  author = {Sanger Institute, Genome Research Limited},
  date   = {2022-10-20},
  title  = {BED Browser Extensible Data},
  url    = {https://samtools.github.io/hts-specs/BEDv1.pdf},
}

@InProceedings{compr-visual,
  author    = {Sami Khuri and Hsiu-Chin Hsu},
  booktitle = {Proceedings of the 2000 {ACM} symposium on Applied computing - {SAC} {\textquotesingle}00},
  date      = {2000},
  title     = {Tools for visualizing text compression algorithms},
  doi       = {10.1145/335603.335716},
  publisher = {{ACM} Press},
}

@Article{lcqs,
  author       = {Jiabing Fu and Bixin Ke and Shoubin Dong},
  date         = {2020-03},
  journaltitle = {{BMC} Bioinformatics},
  title        = {{LCQS}: an efficient lossless compression tool of quality scores with random access functionality},
  doi          = {10.1186/s12859-020-3428-7},
  number       = {1},
  volume       = {21},
  publisher    = {Springer Science and Business Media {LLC}},
}

@Book{delfs_knebl,
  author    = {Delfs, Hans and Knebl, Helmut},
  date      = {2007},
  title     = {Introduction to Cryptography},
  isbn      = {9783540492436},
  pages     = {368},
  publisher = {Springer},
  subtitle  = {Principles and Applications (Information Security and Cryptography)},
}

@Article{cc14,
  author       = {Kashfia Sailunaz and Mohammed Rokibul Alam Kotwal and Mohammad Nurul Huda},
  date         = {2014-03},
  journaltitle = {International Journal of Computer Applications},
  title        = {Data Compression Considering Text Files},
  doi          = {10.5120/15765-4456},
  number       = {11},
  pages        = {27--32},
  volume       = {90},
  publisher    = {Foundation of Computer Science},
}

@Article{cnet13,
  author       = {Manish RajShivare and Yogendra P. S. Maravi and Sanjeev Sharma},
  date         = {2013-10},
  journaltitle = {International Journal of Computer Applications},
  title        = {Analysis of Header Compression Techniques for Networks: A Review},
  doi          = {10.5120/13856-1701},
  number       = {5},
  pages        = {13--20},
  volume       = {80},
  publisher    = {Foundation of Computer Science},
}

@TechReport{rfcgzip,
  author       = {L. Peter Deutsch and Jean-Loup Gailly and Mark Adler and L. Peter Deutsch and Glenn Randers-Pehrson},
  institution  = {RFC Editor},
  title        = {GZIP file format specification version 4.3},
  note         = {\url{http://www.rfc-editor.org/rfc/rfc1952.txt}},
  number       = {1952},
  type         = {RFC},
  url          = {http://www.rfc-editor.org/rfc/rfc1952.txt},
  howpublished = {Internet Requests for Comments},
  issn         = {2070-1721},
  month        = {May},
  publisher    = {RFC Editor},
  year         = {1996},
}

@Article{huf52,
  author      = {Huffman, David A.},
  title       = {A Method for the Construction of Minimum-Redundancy Codes},
  number      = {9},
  pages       = {1098-1101},
  volume      = {40},
  added-at    = {2009-01-14T00:43:43.000+0100},
  biburl      = {https://www.bibsonomy.org/bibtex/2585b817b85d7278b868329672ddded96/dret},
  description = {dret'd bibliography},
  interhash   = {d00a180c1c2e7851560c2d51e0fd8f92},
  intrahash   = {585b817b85d7278b868329672ddded96},
  journal     = {Proceedings of the Institute of Radio Engineers},
  keywords    = {imported},
  month       = {September},
  timestamp   = {2009-01-14T00:43:44.000+0100},
  uri         = {http://compression.graphicon.ru/download/articles/huff/huffman_1952_minimum-redundancy-codes.pdf},
  year        = {1952},
}

@Article{moffat20,
  author       = {Alistair Moffat},
  date         = {2020-07},
  journaltitle = {{ACM} Computing Surveys},
  title        = {Huffman Coding},
  doi          = {10.1145/3342555},
  number       = {4},
  pages        = {1--35},
  volume       = {52},
  publisher    = {Association for Computing Machinery ({ACM})},
}

@Article{moffat_arith,
  author       = {Alistair Moffat and Radford M. Neal and Ian H. Witten},
  date         = {1998-07},
  journaltitle = {{ACM} Transactions on Information Systems},
  title        = {Arithmetic coding revisited},
  doi          = {10.1145/290159.290162},
  number       = {3},
  pages        = {256--294},
  volume       = {16},
  publisher    = {Association for Computing Machinery ({ACM})},
}

@Article{ris76,
  author       = {J. J. Rissanen},
  date         = {1976-05},
  journaltitle = {{IBM} Journal of Research and Development},
  title        = {Generalized Kraft Inequality and Arithmetic Coding},
  doi          = {10.1147/rd.203.0198},
  number       = {3},
  pages        = {198--203},
  volume       = {20},
  publisher    = {{IBM}},
}

@Comment{jabref-meta: databaseType:biblatex;}
