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- \chapter{Results and Discussion}
- \label{t:effectivity}
- \sffamily
- \begin{footnotesize}
- \begin{longtable}[rcrr]{ p{.2\textwidth} p{.2\textwidth} p{.2\textwidth} p{.2\textwidth}}
- \caption[Compression Effectivity] % Caption für das Tabellenverzeichnis
- {File sizes in different compression formats} % Caption für die Tabelle selbst
- \\
- \toprule
- \textbf{ID.} & \textbf{Source File} & \textbf{\acs{GeCo}} & \textbf{Samtools \acs{CRAM}} \\
- \midrule
- File 1& 253105752& 46364770& 55769827\\
- File 2& 136027438& 27411806& 32238052\\
- File 3& 137338124& 27408185& 32529673\\
- File 4& 135496623& 27231126& 32166751\\
- File 5& 116270459& 20696778& 23568321\\
- File 6& 108827838& 18676723& 21887811\\
- File 7& 103691101& 16804782& 20493276\\
- File 8& 91844042& 16005173& 19895937\\
- File 9& 84645123& 15877526& 20177456\\
- File 10& 81712897& 16344067& 19310998\\
- File 11& 59594634& 10488207& 14251243\\
- File 12& 246230144& 49938168& 58026123\\
- File 13& 65518294& 13074402& 15510100\\
- File 14& 47488540& 7900773& 9708258\\
- File 15& 51665500& 41117340& 47707954\\
- File 16& 201600541& 39248276& 45564837\\
- File 17& 193384854& 37133480& 43655371\\
- File 18& 184563953& 35355184& 40980906\\
- File 19& 173652802& 31813760& 38417108\\
- File 20& 162001796& 30104816& 34926945\\
- File 21& 147557670& 23932541& 29459829\\
- \bottomrule
- \end{longtable}
- \end{footnotesize}
- \rmfamily
- % raw data and charts
- % differences in used algos/ algos in tools <- k5?
- % optimization approach
- % further research focus <- ask if wanted
- % todo ms to minutes and bytes to mb. Those tables move to the appendix
- The two tables above contain rather raw measurement values for the two goals, described in \ref{k5:goals}. The first table shows how long each compression procedure took. Each row contains information about one of the \texttt{Homo\_sapiens.GRCh38.dna.chromosome.}x\texttt{.fa} files. To improve readability, the filename were replaced by \texttt{File}. To determine which file was compressed, simply replace the placeholder with the number following \texttt{File}.\\
- While \acs{GeCo} takes more time to compress, an increase in effectivity, meaning in the reduction of file size, can be recognized.\\
- \label{t:sizepercent}
- \sffamily
- \begin{footnotesize}
- \begin{longtable}[r]{ p{.2\textwidth} p{.2\textwidth} p{.2\textwidth} p{.2\textwidth}}
- \caption[Compression Effectivity] % Caption für das Tabellenverzeichnis
- {File sizes in different compression formats in \textbf{percent}} % Caption für die Tabelle selbst
- \\
- \toprule
- \textbf{ID.} & \textbf{\acs{GeCo} \%} & \textbf{Samtools \acs{BAM}\%}& \textbf{Samtools \acs{CRAM} \%} \\
- \midrule
- File 1& 18.32& 24.51& 22.03\\
- File 2& 20.15& 26.36& 23.7\\
- File 3& 19.96& 26.14& 23.69\\
- File 4& 20.1& 26.26& 23.74\\
- File 5& 17.8& 22.76& 20.27\\
- File 6& 17.16& 22.31& 20.11\\
- File 7& 16.21& 21.69& 19.76\\
- File 8& 17.43& 23.48& 21.66\\
- File 9& 18.76& 25.16& 23.84\\
- File 10& 20.0& 25.31& 23.63\\
- File 11& 17.6& 24.53& 23.91\\
- File 12& 20.28& 26.56& 23.57\\
- File 13& 19.96& 25.6& 23.67\\
- File 14& 16.64& 22.06& 20.44\\
- File 15& 79.58& 103.72& 92.34\\
- File 16& 19.47& 25.52& 22.6\\
- File 17& 19.2& 25.25& 22.57\\
- File 18& 19.16& 25.04& 22.2\\
- File 19& 18.32& 24.4& 22.12\\
- File 20& 18.58& 24.14& 21.56\\
- File 21& 16.22& 22.17& 19.96\\
- &&&\\
- \textbf{Total}& 21.47& 28.24& 25.59\\
- \bottomrule
- \end{longtable}
- \end{footnotesize}
- \rmfamily
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