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- %SUMMARY
- %- ABSTRACT
- %- INTRODUCTION
- %# BASICS
- %- \acs{DNA} STRUCTURE
- %- DATA TYPES
- % - BAM/FASTQ
- % - NON STANDARD
- %- COMPRESSION APPROACHES
- % - SAVING DIFFERENCES WITH GIVEN BASE \acs{DNA}
- % - HUFFMAN ENCODING
- % - PROBABILITY APPROACHES (WITH BASE?)
- %
- %# COMPARING TOOLS
- %-
- %# POSSIBLE IMPROVEMENT
- %- \acs{DNA}S STOCHASTICAL ATTRIBUTES
- %- IMPACT ON COMPRESSION
- %\chapter{Analysis for Possible Compression Improvements}
- \chapter{Feasibillity Analysis for New Algorithm Considering Stochastic Organisation of Genomes}
- % first thoughts:
- % - just save one nuceleotide every n bits
- % - save checksum for whole genome
- % - use algorithms (from new discoveries) to recreate genome
- % - check checksum -> finished : retry
- % - can run recursively and threaded
- % - im falle von testdata: hetzer, dedizierter hardware, auf server compilen, specs aufschreiben -> 'lscpu' || 'cat /proc/cpuinfo'
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